Metabolome + Genome re-sequencing

Service Description

BGI offers multi-omics services to look across genomics, transcriptomics, epigenomics, proteomics and metabolomics, with the flexibility to customize solutions that meet your specific needs. All projects are supported by an advanced bioinformatics infrastructure.

Mass Spectrometry Service Specification

Metabolome platform: Untargeted/Targeted Metabolomics and Lipidomics services. Genome re-sequencing platform: Genome re-sequencing services.

Quality Standard

Summary includes data analysis

Reports provided in PDF format, RAW files available upon request

Turn Around Time

Typical 2-4 weeks from LC-MS/MS raw data acceptance to data report delivery

Metabolome + Genome re-sequencing Correlation Analysis(mGWAS)

Early correlation studies only focused on individual and highly heritable macrophenotypes, with the aim to identify a few common major gene variants. Fast advances in high-throughput sequencing technologies, have allowed scientists to expand their targets to rare variants on a genome-wide scale and focus on elucidating the genetic basis of complex human diseases, or quantitative traits in animals and plants.

Metabolomics, based on high-throughput mass spectrometry, can decompose a small number of macroscopic phenotypes into metabolic molecular phenotypes, and find significantly associated metabolic indicators and gene variants through mGWAS, which can more directly reveal the molecular mechanism behind macroscopic phenotypes such as diseases. As a research hotspot in recent years, mGWAS has been widely used in animal and plant variety breeding, human disease research and other fields.

  • We accept protein samples in solution or gel format. For complex in-solution samples we can provide electrophoresis services, including preparative SDS-PAGE and analytical staining.
INTEGRATIVE ANALYSIS TOTAL NUMBER OF SAMPLES BIOLOGICAL DUPLICATES
Genome re-sequencing+ metabolome > 100 ≥ 10

 

  • Correlation between pheno/ metabotypes and SNPs
  • Correlation region screening and candidate gene annotation
  • Correlation between phenotypes and metabotypes

Unique DNBSEQ™ Sequencing Technology

BGI’s RNA Sequencing services are typically executed with proprietary DNBSEQ™ sequencing technology platforms, for great sequencing data at some of the lowest costs in the industry. DNBSEQ™ offers advantages in terms of lower amplification error rates and much lower duplication rates. In addition, studies have shown the lower index hopping rate in DNBSEQ™ platforms.