{"id":4086,"date":"2023-05-25T20:08:45","date_gmt":"2023-05-25T20:08:45","guid":{"rendered":"http:\/\/www.geneethic.com.tr\/?page_id=4086"},"modified":"2024-11-12T11:54:55","modified_gmt":"2024-11-12T11:54:55","slug":"label-free-dda-proteomics","status":"publish","type":"page","link":"https:\/\/www.geneethic.com.tr\/?page_id=4086","title":{"rendered":"Nanoproteomics"},"content":{"rendered":"[vc_row et_full_width=&#8221;true&#8221; et_row_padding=&#8221;true&#8221; css=&#8221;.vc_custom_1579113527778{padding-top: 120px !important;padding-bottom: 60px !important;background-color: #f6f6f6 !important;}&#8221;][vc_column css=&#8221;.vc_custom_1684760689814{background-color: #f6f6f6 !important;}&#8221;][vc_row_inner][vc_column_inner animation=&#8221;animation bottom-to-top&#8221;]\t<div id=\"et-image-157\" class=\"et-image aligncenter full   et_image_link\">\n\t\t<div class=\"et-image-inner animation bottom-to-top\">\n\t\t\t\t\t\t\t<div class=\"et-image-thumb \">\n\t\t\t\t\t<img loading=\"lazy\" decoding=\"async\" width=\"300\" height=\"300\" src=\"https:\/\/www.geneethic.com.tr\/wp-content\/uploads\/2024\/11\/m7-300x300.png\" class=\"attachment-medium\" alt=\"\" srcset=\"https:\/\/www.geneethic.com.tr\/wp-content\/uploads\/2024\/11\/m7-300x300.png 300w, https:\/\/www.geneethic.com.tr\/wp-content\/uploads\/2024\/11\/m7-150x150.png 150w, https:\/\/www.geneethic.com.tr\/wp-content\/uploads\/2024\/11\/m7.png 500w\" sizes=\"auto, (max-width: 300px) 100vw, 300px\" \/>\t\t\t\t<\/div>\n\t\t\t\t\t\t\t\t\t\t\t<\/div>\n\t<\/div>\n  [vc_column_text css=&#8221;.vc_custom_1730485393435{margin-bottom: 0px !important;}&#8221;]\n<h4 class=\"2xl:text-4xl xl:text-3xl lg:text-2xl md:text-2xl text-3xl leading-relaxed sm:font-normal font-semibold text-black sm:mb-10 mb-6 mt-0 text-pre-wrap\">Nanoproteomics Service Overview<\/h4>\n<p class=\"2xl:text-4xl xl:text-3xl lg:text-2xl md:text-2xl text-3xl leading-relaxed sm:font-normal font-semibold text-black sm:mb-10 mb-6 mt-0 text-pre-wrap\">To date, most proteomics studies have been based on proteins obtained from the homogenization of large volumes of cells or tissues. However, with the advancement of medical research, there is a growing need for the analysis of highly specialized specimens within specific applications and research areas such as trace specimens identified by forensic experts, or intra-tumor heterogeneity research.<br \/>\nNanoproteomics refers to quantitative proteomics analysis of small cell populations (typically &lt; 5,000 cells) by the combination of in-situ cleavage and DDA label free technology, and offers possibilities for analysis unavailable with conventional protein extraction and mass spectrometry.<br \/>\nBGI has extensive experience in the field of nanoproteomics spanning cellular heterogeneity research across rare cell populations, hard-to-obtain clinical specimens, and pathological tissues.[\/vc_column_text][\/vc_column_inner][\/vc_row_inner][\/vc_column][\/vc_row][vc_row et_full_width=&#8221;true&#8221; et_row_padding=&#8221;true&#8221; css=&#8221;.vc_custom_1579113590633{padding-top: 60px !important;background-color: #f6f6f6 !important;}&#8221;][vc_column][vc_row_inner et_column_align=&#8221;align-center&#8221; content_placement=&#8221;middle&#8221;][vc_column_inner width=&#8221;1\/2&#8243; animation=&#8221;animation bottom-to-top&#8221; offset=&#8221;vc_col-lg-6&#8243;][vc_column_text css=&#8221;.vc_custom_1730485401403{margin-bottom: 0px !important;}&#8221;]\n<h4>Mass Spectrometry Service Specification<\/h4>\n<p>Nanoproteomics services are performed using nano-flow liquid chromatography and cutting-edge Orbitrap Fusion Lumos mass spectrometer.<\/p>\n<div class=\"flex justify-center items-center w-[160px] flex-shrink-0 relative sm:mb-0 mb-10 \"><img decoding=\"async\" class=\"max-w-[120px]\" src=\"https:\/\/cdn.it.bgi.com\/source\/list1_5.png\" alt=\"\" \/><\/div>\n<div class=\"flex-1\">\n<h4 class=\"text-lg text-[#3ba792] mb-4\">Sample Preparation and Services<\/h4>\n<div>\n<div class=\"style_seve_content__QlWY2\">\n<p>The QC of enzymatic hydrolysis is strictly controlled by LC-MS<\/p>\n<p>DDA-Spectral Library generated using HPLC technology and sample fractionation<\/p>\n<p>2h\/fraction; 2h for DDA analysis<\/p>\n<p>&nbsp;<\/p>\n<p><img decoding=\"async\" class=\"max-w-[120px]\" src=\"https:\/\/cdn.it.bgi.com\/source\/list2_7.png\" alt=\"\" \/><\/p>\n<div class=\"flex-1\">\n<h4 class=\"text-lg text-[#3ba792] mb-4\">Quality Standard<\/h4>\n<div>\n<div class=\"style_seve_content__QlWY2\">\n<p>Summary includes all methods and data analysis<\/p>\n<p>Reports provided in Excel or PDF format, RAW files available upon request<\/p>\n<p><img decoding=\"async\" class=\"max-w-[120px] alignleft\" src=\"https:\/\/cdn.it.bgi.com\/source\/list3_14.png\" alt=\"\" \/><\/p>\n<div class=\"flex-1\">\n<h4 class=\"text-lg text-[#3ba792] mb-4\">Turn Around Time<\/h4>\n<div>\n<div class=\"style_seve_content__QlWY2\"><\/div>\n<\/div>\n<\/div>\n<p>Typical 5-6 weeks from sample QC acceptance to data report delivery<\/p>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n[\/vc_column_text][\/vc_column_inner][vc_column_inner width=&#8221;1\/2&#8243; animation=&#8221;animation bottom-to-top&#8221;][vc_column_text css=&#8221;.vc_custom_1730485407521{margin-bottom: 0px !important;}&#8221;]\n<h4>Workflow<\/h4>\n<p style=\"text-align: left;\"><img loading=\"lazy\" decoding=\"async\" class=\"aligncenter wp-image-4619 size-large\" src=\"https:\/\/www.geneethic.com.tr\/wp-content\/uploads\/2024\/11\/Namo-1024x423.png\" alt=\"\" width=\"1024\" height=\"423\" srcset=\"https:\/\/www.geneethic.com.tr\/wp-content\/uploads\/2024\/11\/Namo-1024x423.png 1024w, https:\/\/www.geneethic.com.tr\/wp-content\/uploads\/2024\/11\/Namo-300x124.png 300w, https:\/\/www.geneethic.com.tr\/wp-content\/uploads\/2024\/11\/Namo-768x318.png 768w, https:\/\/www.geneethic.com.tr\/wp-content\/uploads\/2024\/11\/Namo-150x62.png 150w, https:\/\/www.geneethic.com.tr\/wp-content\/uploads\/2024\/11\/Namo.png 1243w\" sizes=\"auto, (max-width: 1024px) 100vw, 1024px\" \/><\/p>\n<p>&nbsp;[\/vc_column_text][\/vc_column_inner][\/vc_row_inner]\t\t<div id=\"et-button-6a10a09f03fc2\" class=\"et_btn_align_left animation left-to-right\">\n\t\t\t<a href=\"http:\/\/www.geneethic.com.tr\/?page_id=2221\" class=\" et_btn button et_btn_sm solid color-  arrow-enabled \"  role=\"button\" title=\"Contact_Geneethic\" ><span>Need a quotation?<\/span><svg xmlns=\"http:\/\/www.w3.org\/2000\/svg\" xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" x=\"0px\" y=\"0px\"\r\n\t width=\"30px\" height=\"18px\" viewBox=\"0 0 30 18\" enable-background=\"new 0 0 30 18\" xml:space=\"preserve\">\r\n<path class=\"handle\" d=\"M20.305,16.212c-0.407,0.409-0.407,1.071,0,1.479s1.068,0.408,1.476,0l7.914-7.952c0.408-0.409,0.408-1.071,0-1.481\r\n\tl-7.914-7.952c-0.407-0.409-1.068-0.409-1.476,0s-0.407,1.071,0,1.48l7.185,7.221L20.305,16.212z\"\/>\r\n<path class=\"bar\" fill-rule=\"evenodd\" clip-rule=\"evenodd\" d=\"M1,8h28.001c0.551,0,1,0.448,1,1c0,0.553-0.449,1-1,1H1c-0.553,0-1-0.447-1-1\r\n\tC0,8.448,0.447,8,1,8z\"\/>\r\n<\/svg>\r\n<\/a>\n\t\t<\/div>\n\t\t\n\t[vc_row_inner et_max_width=&#8221;&#8221; et_column_align=&#8221;align-center&#8221; content_placement=&#8221;middle&#8221;][vc_column_inner offset=&#8221;vc_col-lg-6&#8243;][\/vc_column_inner][\/vc_row_inner][\/vc_column][\/vc_row][vc_row et_column_align=&#8221;align-center&#8221; css=&#8221;.vc_custom_1579113617984{padding-top: 60px !important;padding-bottom: 60px !important;}&#8221;][vc_column width=&#8221;1\/2&#8243; animation=&#8221;animation bottom-to-top&#8221;][vc_tta_accordion active_section=&#8221;1&#8243;][vc_tta_section title=&#8221;Specifications&#8221; tab_id=&#8221;1557543124640-60cb9bb3-2cc8&#8243;][vc_column_text]\n<ul>\n<li>The QC of enzymatic hydrolysis is strictly controlled by LC-MS<\/li>\n<li>DDA-Spectral Library generated using HPLC technology and sample fractionation<\/li>\n<li>2h\/fraction; 2h for DDA analysis<\/li>\n<li>Summary includes all methods and data analysis<\/li>\n<li>Reports provided in Excel or PDF format, RAW files available upon request<\/li>\n<li>Typical 5-6 weeks from sample QC acceptance to data report delivery<\/li>\n<\/ul>\n[\/vc_column_text][\/vc_tta_section][vc_tta_section title=&#8221;Sample Requirements&#8221; tab_id=&#8221;1557543124710-e0287025-a0eb&#8221;][vc_column_text]Please see the catalogue[\/vc_column_text][\/vc_tta_section][vc_tta_section title=&#8221;Data Analysis&#8221; tab_id=&#8221;1684783447897-d707e395-dd7f&#8221;][vc_column_text]\n<ul>\n<li>Data analysis and validation performed with Mascot<\/li>\n<li>Protein identification and quantification list<\/li>\n<li>Cluster analysis of expression patterns across multiple samples<\/li>\n<li>Protein GO\/COG\/KOG\/Pathway annotation<\/li>\n<li>GO\/Pathway enrichment analysis of differential proteins<\/li>\n<li>Protein-protein interaction analysis<\/li>\n<li>Protein subcellular localization analysis<\/li>\n<li>Repeatability analysis<\/li>\n<li>Quantitative proteomics and phosphoproteomics correlation analysis<\/li>\n<li><\/li>\n<li>Repeatability analysis<\/li>\n<li>Quantitative proteomics and phosphoproteomics correlation anal<\/li>\n<\/ul>\n[\/vc_column_text][\/vc_tta_section][\/vc_tta_accordion][vc_column_text animation=&#8221;animation bottom-to-top&#8221;]\n<div class=\"md:px-[13%] px-[5%] pt-40 pb-10 2xl:h-[298px] sm:min-h-min min-h-[15rem] bg-no-repeat bg-cover bg-center bg-gradient\">\n<div class=\"md:px-[13%] px-[5%] pt-40 pb-10 2xl:h-[298px] sm:min-h-min min-h-[15rem] bg-no-repeat bg-cover bg-center\">\n<p class=\"text-white text-pre-wrap 2xl:text-6xl xl:text-5xl lg:text-4xl md:text-3xl text-4xl\" style=\"text-align: center;\"><strong><a href=\"https:\/\/www.geneethic.com.tr\/wp-content\/uploads\/2024\/11\/Nanoproteomics-Service-Overview.pdf\" target=\"_blank\" rel=\"noopener\">Nanoproteomics<\/a><\/strong><\/p>\n<\/div>\n<\/div>\n<p style=\"text-align: center;\"><strong><img loading=\"lazy\" decoding=\"async\" class=\"aligncenter wp-image-4369 size-thumbnail\" src=\"https:\/\/www.geneethic.com.tr\/wp-content\/uploads\/2023\/11\/download-6155763_1280-150x150.webp\" alt=\"\" width=\"150\" height=\"150\" srcset=\"https:\/\/www.geneethic.com.tr\/wp-content\/uploads\/2023\/11\/download-6155763_1280-150x150.webp 150w, https:\/\/www.geneethic.com.tr\/wp-content\/uploads\/2023\/11\/download-6155763_1280-300x300.webp 300w, https:\/\/www.geneethic.com.tr\/wp-content\/uploads\/2023\/11\/download-6155763_1280-1024x1024.webp 1024w, https:\/\/www.geneethic.com.tr\/wp-content\/uploads\/2023\/11\/download-6155763_1280-768x768.webp 768w, https:\/\/www.geneethic.com.tr\/wp-content\/uploads\/2023\/11\/download-6155763_1280.webp 1280w\" sizes=\"auto, (max-width: 150px) 100vw, 150px\" \/><br \/>\n<\/strong>[\/vc_column_text][\/vc_column][\/vc_row][vc_row et_full_width=&#8221;true&#8221; et_row_padding=&#8221;true&#8221; css=&#8221;.vc_custom_1579113623784{padding-top: 60px !important;background-color: #f6f6f6 !important;}&#8221;][vc_column][vc_row_inner et_column_align=&#8221;align-center&#8221; content_placement=&#8221;middle&#8221;][vc_column_inner animation=&#8221;animation bottom-to-top&#8221; offset=&#8221;vc_col-lg-6&#8243;][vc_column_text css=&#8221;.vc_custom_1693853529047{padding-right: 10% !important;padding-left: 10% !important;}&#8221;]\n<h2 style=\"text-align: center;\">Unique DNBSEQ\u2122 Sequencing Technology<\/h2>\n<p>BGI&#8217;s RNA Sequencing services are typically executed with proprietary DNBSEQ\u2122 sequencing technology platforms, for great sequencing data at some of the lowest costs in the industry. DNBSEQ\u2122 offers advantages in terms of lower amplification error rates and much lower duplication rates. In addition, studies have shown the lower index hopping rate in DNBSEQ\u2122 platforms.[\/vc_column_text][\/vc_column_inner][\/vc_row_inner][vc_row_inner et_max_width=&#8221;&#8221; et_column_align=&#8221;align-center&#8221; content_placement=&#8221;middle&#8221;][vc_column_inner animation=&#8221;animation right-to-left&#8221; offset=&#8221;vc_col-lg-6&#8243;]\t<div id=\"et-image-361\" class=\"et-image     et_image_link\">\n\t\t<div class=\"et-image-inner animation bottom-to-top\">\n\t\t\t\t\t\t\t<div class=\"et-image-thumb \">\n\t\t\t\t\t<img loading=\"lazy\" decoding=\"async\" width=\"1522\" height=\"582\" src=\"https:\/\/www.geneethic.com.tr\/wp-content\/uploads\/2023\/05\/dedede.png\" class=\"attachment-full\" alt=\"\" srcset=\"https:\/\/www.geneethic.com.tr\/wp-content\/uploads\/2023\/05\/dedede.png 1522w, https:\/\/www.geneethic.com.tr\/wp-content\/uploads\/2023\/05\/dedede-300x115.png 300w, https:\/\/www.geneethic.com.tr\/wp-content\/uploads\/2023\/05\/dedede-1024x392.png 1024w, https:\/\/www.geneethic.com.tr\/wp-content\/uploads\/2023\/05\/dedede-768x294.png 768w, https:\/\/www.geneethic.com.tr\/wp-content\/uploads\/2023\/05\/dedede-150x57.png 150w\" sizes=\"auto, (max-width: 1522px) 100vw, 1522px\" \/>\t\t\t\t<\/div>\n\t\t\t\t\t\t\t\t\t\t\t<\/div>\n\t<\/div>\n  [\/vc_column_inner][\/vc_row_inner][\/vc_column][\/vc_row][vc_row][vc_column][\/vc_column][\/vc_row]\n","protected":false},"excerpt":{"rendered":"<p>[vc_row et_full_width=&#8221;true&#8221; et_row_padding=&#8221;true&#8221; css=&#8221;.vc_custom_1579113527778{padding-top: 120px !important;padding-bottom: 60px !important;background-color: #f6f6f6 !important;}&#8221;][vc_column css=&#8221;.vc_custom_1684760689814{background-color: #f6f6f6 !important;}&#8221;][vc_row_inner][vc_column_inner animation=&#8221;animation bottom-to-top&#8221;][vc_column_text css=&#8221;.vc_custom_1730485393435{margin-bottom: 0px !important;}&#8221;] Nanoproteomics Service Overview To date, most proteomics studies have been based on proteins obtained from the homogenization of large volumes of cells or tissues. However, with the advancement of medical research, there&hellip;<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-4086","page","type-page","status-publish","hentry"],"aioseo_notices":[],"_links":{"self":[{"href":"https:\/\/www.geneethic.com.tr\/index.php?rest_route=\/wp\/v2\/pages\/4086","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.geneethic.com.tr\/index.php?rest_route=\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.geneethic.com.tr\/index.php?rest_route=\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.geneethic.com.tr\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.geneethic.com.tr\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=4086"}],"version-history":[{"count":16,"href":"https:\/\/www.geneethic.com.tr\/index.php?rest_route=\/wp\/v2\/pages\/4086\/revisions"}],"predecessor-version":[{"id":4886,"href":"https:\/\/www.geneethic.com.tr\/index.php?rest_route=\/wp\/v2\/pages\/4086\/revisions\/4886"}],"wp:attachment":[{"href":"https:\/\/www.geneethic.com.tr\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=4086"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}